{ "_id": "6a12a794acfb0bcc41d14bab", "Package": "incidence2", "Type": "Package", "Title": "Compute, Handle and Plot Incidence of Dated Events", "Version": "2.6.4.9000", "Authors@R": "c(\nperson(\"Tim\", \"Taylor\", role = c(\"aut\", \"cre\"), email = \"tim.taylor@hiddenelephants.co.uk\",\ncomment = c(ORCID = \"0000-0002-8587-7113\")),\nperson(\"Thibaut\", \"Jombart\", role = \"ctb\", email = \"thibautjombart@gmail.com\")\n)", "Description": "Provides functions and classes to compute, handle and\nvisualise incidence from dated events for a defined time\ninterval. Dates can be provided in various standard formats.\nThe class 'incidence2' is used to store computed incidence and\ncan be easily manipulated, subsetted, and plotted.", "Encoding": "UTF-8", "License": "MIT + file LICENSE", "URL": "https://www.reconverse.org/incidence2/,\nhttps://github.com/reconverse/incidence2", "BugReports": "https://github.com/reconverse/incidence2/issues", "RoxygenNote": "7.3.3", "Roxygen": "list(markdown = TRUE)", "VignetteBuilder": "litedown", "Config/testthat/load-all": "list(export_all = FALSE, helpers = FALSE)", "Config/testthat/edition": "3", "Config/testthat/parallel": "true", "Config/testthat/start-first": "plot, incidence, bootstrap", "LazyData": "true", "Remotes": [ "reconverse/grates/pkg" ], "Config/pak/sysreqs": "libicu-dev", "Repository": "https://reconverse.r-universe.dev", "Date/Publication": "2026-03-25 17:24:51 UTC", "RemoteUrl": "https://github.com/reconverse/incidence2", "RemoteRef": "HEAD", "RemoteSha": "443fd4c0d0ec4d1c4a5a1bb1de8afb22205d59fd", "RemoteSubdir": "pkg", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-24 07:16:44 UTC", "User": "root" }, "Author": "Tim Taylor [aut, cre] (ORCID: ),\nThibaut Jombart [ctb]", "Maintainer": "Tim Taylor ", "MD5sum": "98f19f685061aba1a25d261a6103ac44", "_user": "reconverse", "_type": "src", "_file": "incidence2_2.6.4.9000.tar.gz", "_fileid": "6bf87e20294c30c0ca7df8b4c7ea77d47069c4e2f01f1cb664087830f713f144", "_filesize": 548105, "_sha256": "6bf87e20294c30c0ca7df8b4c7ea77d47069c4e2f01f1cb664087830f713f144", "_created": "2026-05-24T07:16:44.000Z", "_published": "2026-05-24T07:24:04.296Z", "_distro": "noble", "_jobs": [ { "job": 77579844686, "time": 143, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "7183202321" }, { "job": 77579844685, "time": 139, "config": "linux-release-x86_64", "r": "4.6.0", "check": "WARNING", "artifact": "7183201849" }, { "job": 77579844687, "time": 91, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "WARNING", "artifact": "7183221748" }, { "job": 77579844694, "time": 96, "config": "macos-release-arm64", "r": "4.6.0", "check": "WARNING", "artifact": "7183232842" }, { "job": 77579669760, "time": 185, "config": "source", "r": "4.6.0", "check": "ERROR", "artifact": "7183184370" }, { "job": 77579844684, "time": 133, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7183200824" }, { "job": 77579844704, "time": 100, "config": "windows-devel", "r": "4.7.0", "check": "WARNING", "artifact": "7183196745" }, { "job": 77579844692, "time": 87, "config": "windows-oldrel", "r": "4.5.3", "check": "WARNING", "artifact": "7183195194" }, { "job": 77579844698, "time": 97, "config": "windows-release", "r": "4.6.0", "check": "WARNING", "artifact": "7183196443" } ], "_buildurl": "https://github.com/r-universe/reconverse/actions/runs/26354866818", "_status": "failure", "_host": "GitHub-Actions", "_upstream": "https://github.com/reconverse/incidence2", "_commit": { "id": "443fd4c0d0ec4d1c4a5a1bb1de8afb22205d59fd", "author": "Tim Taylor ", "committer": "Tim Taylor ", "message": "refactor: onyl calculate duration for integer dates\n", "time": 1774459491 }, "_maintainer": { "name": "Tim Taylor", "email": "tim.taylor@hiddenelephants.co.uk", "login": "timtaylor", "description": "\n", "uuid": 43499035, "orcid": "0000-0002-8587-7113" }, "_registered": true, "_dependencies": [ { "package": "grates", "version": ">= 1.8.0", "role": "Depends" }, { "package": "R", "version": ">= 4.1.0", "role": "Depends" }, { "package": "grDevices", "role": "Imports" }, { "package": "data.table", "version": ">= 1.15.0", "role": "Imports" }, { "package": "pillar", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "tibble", "role": "Imports" }, { "package": "tidyr", "role": "Imports" }, { "package": "dplyr", "version": ">= 1.1.0", "role": "Imports" }, { "package": "tidyselect", "role": "Imports" }, { "package": "rlang", "role": "Imports" }, { "package": "vctrs", "role": "Imports" }, { "package": "ympes", "version": ">= 1.3.0", "role": "Imports" }, { "package": "outbreaks", "role": "Suggests" }, { "package": "ggplot2", "role": "Suggests" }, { "package": "scales", "role": "Suggests" }, { "package": "litedown", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" }, { "package": "ciTools", "role": "Suggests" }, { "package": "withr", "role": "Suggests" } ], "_owner": "reconverse", "_selfowned": true, "_usedby": 2, "_updates": [ { "week": "2025-23", "n": 3 }, { "week": "2025-24", "n": 1 }, { "week": "2025-29", "n": 8 }, { "week": "2025-32", "n": 3 }, { "week": "2025-33", "n": 3 }, { "week": "2025-48", "n": 1 }, { "week": "2026-09", "n": 3 }, { "week": "2026-10", "n": 3 }, { "week": "2026-13", "n": 9 } ], "_tags": [ { "name": "v2.6.3", "date": "2025-06-04" }, { "name": "v2.6.4", "date": "2026-03-02" } ], "_stars": 17, "_contributors": [ { "user": "timtaylor", "count": 661, "uuid": 43499035 }, { "user": "thibautjombart", "count": 6, "uuid": 10757154 } ], "_userbio": { "uuid": 75848053, "type": "organization", "name": "reconverse" }, "_downloads": { "count": 821, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/incidence2" }, "_devurl": "https://github.com/reconverse/incidence2", "_searchresults": 141, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/incidence2.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/reconverse/incidence2", "_realowner": "reconverse", "_cranurl": true, "_releases": [ { "version": "0.1.0", "date": "2020-09-07" }, { "version": "0.2.0", "date": "2020-09-22" }, { "version": "0.2.1", "date": "2020-10-16" }, { "version": "0.2.2", "date": "2020-11-12" }, { "version": "1.0.0", "date": "2021-03-30" }, { "version": "1.1", "date": "2021-05-29" }, { "version": "1.2.0", "date": "2021-07-07" }, { "version": "1.2.1", "date": "2021-07-14" }, { "version": "1.2.2", "date": "2021-08-23" }, { "version": "1.2.3", "date": "2021-11-07" }, { "version": "2.0.0", "date": "2023-03-17" }, { "version": "2.1.0", "date": "2023-05-31" }, { "version": "2.2.1", "date": "2023-06-13" }, { "version": "2.2.3", "date": "2023-12-05" }, { "version": "2.3.0", "date": "2024-05-23" }, { "version": "2.3.1", "date": "2024-05-31" }, { "version": "2.4.0", "date": "2024-09-02" }, { "version": "2.5.0", "date": "2024-10-06" }, { "version": "2.6.0", "date": "2024-11-22" }, { "version": "2.6.1", "date": "2025-03-11" }, { "version": "2.6.2", "date": "2025-04-14" }, { "version": "2.6.3", "date": "2025-06-04" }, { "version": "2.6.4", "date": "2026-03-02" } ], "_exports": [ "as_incidence", "as_tibble", "as.data.table", "bootstrap_incidence", "build_incidence", "complete_dates", "cumulate", "estimate_peak", "facet_plot", "first_peak", "get_count_value", "get_count_value_name", "get_count_variable", "get_count_variable_name", "get_date_index", "get_date_index_name", "get_dates", "get_dates_name", "get_group_names", "get_groups", "get_interval", "get_interval_duration", "get_timespan", "incidence", "incidence_", "keep_first", "keep_last", "keep_peaks", "mutate", "muted", "nest", "new_incidence", "regroup", "regroup_", "select", "summarise", "unnest", "unpack", "validate_incidence", "vibrant" ], "_datasets": [ { "name": "covidregionaldataUK", "title": "Regional data for COVID-19 cases in the UK", "object": "covidregionaldataUK", "class": [ "data.frame" ], "fields": [ "date", "region", "region_code", "cases_new", "cases_total", "deaths_new", "deaths_total", "recovered_new", "recovered_total", "hosp_new", "hosp_total", "tested_new", "tested_total" ], "rows": 6370, "table": true, "tojson": true } ], "_help": [ { "page": "accessors", "title": "Access various elements of an incidence object", "topics": [ "accessors", "get_count_value", "get_count_value.default", "get_count_value.incidence2", "get_count_value_name", "get_count_value_name.default", "get_count_value_name.incidence2", "get_count_variable", "get_count_variable.default", "get_count_variable.incidence2", "get_count_variable_name", "get_count_variable_name.default", "get_count_variable_name.incidence2", "get_dates", "get_dates_name", "get_date_index", "get_date_index.default", "get_date_index.incidence2", "get_date_index_name", "get_date_index_name.default", "get_date_index_name.incidence2", "get_groups", "get_groups.default", "get_groups.incidence2", "get_group_names", "get_group_names.default", "get_group_names.incidence2" ] }, { "page": "as", "title": "Coerce to and from an incidence object", "topics": [ "as", "as.data.frame.incidence2", "as.data.table.incidence2", "as_incidence", "as_incidence.default", "as_incidence.incidence2", "as_tibble.incidence2" ] }, { "page": "bootstrap_incidence", "title": "Bootstrap incidence time series", "topics": [ "bootstrap_incidence" ] }, { "page": "complete_dates", "title": "Complete dates for all group combinations", "topics": [ "complete_dates" ] }, { "page": "covidregionaldataUK", "title": "Regional data for COVID-19 cases in the UK", "topics": [ "covidregionaldataUK" ] }, { "page": "cumulate", "title": "Compute cumulative 'incidence'", "topics": [ "cumulate" ] }, { "page": "dplyr-verbs", "title": "dplyr and tidyr verbs", "topics": [ "dplyr-verbs", "mutate.incidence2", "nest.incidence2", "summarise.incidence2" ] }, { "page": "estimate_peak", "title": "Estimate the peak date of an incidence curve", "topics": [ "estimate_peak", "estimate_peaks" ] }, { "page": "get_interval_duration.incidence2", "title": "Days covered by the date index of an incidence object", "topics": [ "get_interval_duration.incidence2" ] }, { "page": "incidence", "title": "Compute the incidence of events", "topics": [ "incidence", "incidence_" ] }, { "page": "keep", "title": "Keep first, last and peak occurences", "topics": [ "first_peak", "keep", "keep_first", "keep_last", "keep_peaks" ] }, { "page": "plot.incidence2", "title": "Plot an incidence object", "topics": [ "plot.incidence2" ] }, { "page": "regroup", "title": "Regroup 'incidence' objects", "topics": [ "regroup", "regroup_" ] }, { "page": "split.incidence2", "title": "Divide an incidence2 object in to it's implicit groupings", "topics": [ "split.incidence2" ] }, { "page": "summary.incidence2", "title": "Summary of an incidence object", "topics": [ "summary.incidence2" ] }, { "page": "palettes", "title": "Color palettes used in incidence", "topics": [ "muted", "palettes", "vibrant" ] } ], "_readme": "https://github.com/reconverse/incidence2/raw/HEAD/README.md", "_rundeps": [ "cli", "cpp11", "data.table", "dplyr", "fastymd", "generics", "glue", "grates", "lifecycle", "magrittr", "pillar", "pkgconfig", "purrr", "R6", "rlang", "stringi", "stringr", "tibble", "tidyr", "tidyselect", "utf8", "vctrs", "withr", "ympes" ], "_score": 6.811031798192642, "_indexed": true, "_nocasepkg": "incidence2", "_universes": [ "reconverse", "timtaylor" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "2.6.4.9000", "date": "2026-05-24T07:18:56.000Z", "distro": "noble", "commit": "443fd4c0d0ec4d1c4a5a1bb1de8afb22205d59fd", "fileid": "8dc9aefd57f0e4b9abc90f9c52372dd810d803a50e9df188303cd32b2ef5d92b", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/reconverse/actions/runs/26354866818" }, { "r": "4.6.0", "os": "linux", "version": "2.6.4.9000", "date": "2026-05-24T07:18:54.000Z", "distro": "noble", "commit": "443fd4c0d0ec4d1c4a5a1bb1de8afb22205d59fd", "fileid": "ee10b60038f818dc20b07d0337ed1255741bf2ef1148eb12c5c5a5913030fed1", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/reconverse/actions/runs/26354866818" }, { "r": "4.5.3", "os": "mac", "version": "2.6.4.9000", "date": "2026-05-24T07:21:53.000Z", "commit": "443fd4c0d0ec4d1c4a5a1bb1de8afb22205d59fd", "fileid": "26dc0af31a0c2d6de8b190d770f4137fa7d8ce0e252a094b70183498bc73591f", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/reconverse/actions/runs/26354866818" }, { "r": "4.6.0", "os": "mac", "version": "2.6.4.9000", "date": "2026-05-24T07:23:31.000Z", "commit": "443fd4c0d0ec4d1c4a5a1bb1de8afb22205d59fd", "fileid": "860944bc220baf24333fa171c1fc9657e4d112622b29190775cb3f6dc5859d24", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/reconverse/actions/runs/26354866818" }, { "r": "4.6.0", "os": "wasm", "version": "2.6.4.9000", "date": "2026-05-24T07:19:14.000Z", "commit": "443fd4c0d0ec4d1c4a5a1bb1de8afb22205d59fd", "fileid": "3b6935b7cab386a29f2e4ec452f7526444a037d43cd51c44c4a2f1c0e6fb1855", "status": "success", "buildurl": "https://github.com/r-universe/reconverse/actions/runs/26354866818" }, { "r": "4.7.0", "os": "win", "version": "2.6.4.9000", "date": "2026-05-24T07:18:05.000Z", "commit": "443fd4c0d0ec4d1c4a5a1bb1de8afb22205d59fd", "fileid": "889bea0cf4f0e782c833b680da115925951ec524af1511d488f637a0da9db48d", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/reconverse/actions/runs/26354866818" }, { "r": "4.5.3", "os": "win", "version": "2.6.4.9000", "date": "2026-05-24T07:17:55.000Z", "commit": "443fd4c0d0ec4d1c4a5a1bb1de8afb22205d59fd", "fileid": "72f8d060ec6c876e083bbec85496fca2680489a55f0728df9f9296fa20872cb5", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/reconverse/actions/runs/26354866818" }, { "r": "4.6.0", "os": "win", "version": "2.6.4.9000", "date": "2026-05-24T07:18:04.000Z", "commit": "443fd4c0d0ec4d1c4a5a1bb1de8afb22205d59fd", "fileid": "1f8d8271ebe6a3af8b36786d4dc1f348744362bd26873a9a775b2f6039e87d1f", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/reconverse/actions/runs/26354866818" } ] }