Package: i2extras 0.2.1.9000
Tim Taylor
i2extras: Functions to Work with 'incidence2' Objects
Provides functions to work with 'incidence2' objects, including a simplified interface for trend fitting and peak estimation. This package is part of the RECON (<https://www.repidemicsconsortium.org/>) toolkit for outbreak analysis (<https://www.reconverse.org/).
Authors:
i2extras_0.2.1.9000.tar.gz
i2extras_0.2.1.9000.zip(r-4.5)i2extras_0.2.1.9000.zip(r-4.4)i2extras_0.2.1.9000.zip(r-4.3)
i2extras_0.2.1.9000.tgz(r-4.4-any)i2extras_0.2.1.9000.tgz(r-4.3-any)
i2extras_0.2.1.9000.tar.gz(r-4.5-noble)i2extras_0.2.1.9000.tar.gz(r-4.4-noble)
i2extras_0.2.1.9000.tgz(r-4.4-emscripten)i2extras_0.2.1.9000.tgz(r-4.3-emscripten)
i2extras.pdf |i2extras.html✨
i2extras/json (API)
NEWS
| # Install 'i2extras' in R: |
| install.packages('i2extras', repos = c('https://reconverse.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/reconverse/i2extras/issues
Last updated 4 months agofrom:10fea678e9. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 05 2024 |
| R-4.5-win | OK | Nov 05 2024 |
| R-4.5-linux | OK | Nov 05 2024 |
| R-4.4-win | OK | Nov 05 2024 |
| R-4.4-mac | OK | Nov 05 2024 |
| R-4.3-win | OK | Nov 05 2024 |
| R-4.3-mac | OK | Nov 05 2024 |
Exports:add_rolling_averagebootstrapestimate_peakfind_peakfit_curvefit_modelflag_low_countsgrowth_rateis_erroris_okis_warningunnest
Dependencies:abindarmbootciToolsclicodacolorspacecpp11data.tabledplyrfansifarvergenericsggplot2gluegratesgtableincidence2isobandlabelinglatticelifecyclelme4magrittrMASSMatrixmgcvminqamunsellnlmenloptrpillarpkgconfigpurrrR6RColorBrewerRcppRcppEigenrlangscalesstringistringrsurvivaltibbletidyrtidyselectutf8vctrsviridisLitewithrympes
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Add a rolling average | add_rolling_average |
| Bootstrap incidence time series | bootstrap |
| Estimate the peak date of an incidence curve | estimate_peak estimate_peaks |
| Find the peak date of an incidence curve | find_peak |
| Fit an epi curve | fit_curve |
| Flag low counts and set them to NAs | flag_low_counts |
| Calculate growth/decay rate | growth_rate growth_rate.default growth_rate.incidence2_fit |
| Error handling for incidence2_fit objects | is_err.incidence2_fit is_error is_error.default is_error.incidence2_fit is_ok is_ok.default is_ok.incidence2_fit is_okerr is_warning is_warning.default is_warning.incidence2_fit |
| Plot a fitted epicurve | plot.incidence2_fit |
