incidence2 - Compute, Handle and Plot Incidence of Dated Events
Provides functions and classes to compute, handle and visualise incidence from dated events for a defined time interval. Dates can be provided in various standard formats. The class 'incidence2' is used to store computed incidence and can be easily manipulated, subsetted, and plotted. This package is part of the RECON (<https://www.repidemicsconsortium.org/>) toolkit for outbreak analysis (<https://www.reconverse.org>).
Last updated 17 days ago
17 stars 7.39 score 24 dependencies 1 dependentsgrates - Grouped Date Classes
Provides a coherent interface and implementation for creating grouped date classes. This package is part of the RECON (<https://www.repidemicsconsortium.org/>) toolkit for outbreak analysis.
Last updated 1 months ago
17 stars 6.78 score 0 dependencies 2 dependentsoutbreaks - A Collection of Disease Outbreak Data
Empirical or simulated disease outbreak data, provided either as RData or as text files.
Last updated 2 years ago
50 stars 6.69 score 0 dependenciesreportfactory - Lightweight Infrastructure for Handling Multiple R Markdown Documents
Provides an infrastructure for handling multiple R Markdown reports, including automated curation and time-stamping of outputs, parameterisation and provision of helper functions to manage dependencies.
Last updated 2 years ago
infrastructureknitrrmarkdownrmarkdown-document
83 stars 5.99 score 31 dependenciestrending - Model Temporal Trends
Provides a coherent interface to multiple modelling tools for fitting trends along with a standardised approach for generating confidence and prediction intervals.
Last updated 1 years ago
8 stars 5.58 score 31 dependencies 1 dependentsi2extras - Functions to Work with 'incidence2' Objects
Provides functions to work with 'incidence2' objects, including a simplified interface for trend fitting and peak estimation. This package is part of the RECON (<https://www.repidemicsconsortium.org/>) toolkit for outbreak analysis (<https://www.reconverse.org/).
Last updated 2 months ago
2 stars 5.25 score 51 dependenciestrendeval - Evaluate Trending Models
Provides a coherent interface for evaluating models fit with the trending package. This package is part of the RECON (<https://www.repidemicsconsortium.org/>) toolkit for outbreak analysis.
Last updated 2 years ago
2 stars 3.00 score 49 dependencies