incidence2 - Compute, Handle and Plot Incidence of Dated Events

Provides functions and classes to compute, handle and visualise incidence from dated events for a defined time interval. Dates can be provided in various standard formats. The class 'incidence2' is used to store computed incidence and can be easily manipulated, subsetted, and plotted. This package is part of the RECON (<https://www.repidemicsconsortium.org/>) toolkit for outbreak analysis (<https://www.reconverse.org>).

Last updated 8 days ago

7.53 score 17 stars 1 packages 103 scripts 945 downloads

grates - Grouped Date Classes

Provides a coherent interface and implementation for creating grouped date classes. This package is part of the RECON (<https://www.repidemicsconsortium.org/>) toolkit for outbreak analysis.

Last updated 2 days ago

6.91 score 17 stars 2 packages 16 scripts 811 downloads

outbreaks - A Collection of Disease Outbreak Data

Empirical or simulated disease outbreak data, provided either as RData or as text files.

Last updated 2 years ago

6.66 score 51 stars 259 scripts 1.2k downloads

reportfactory - Lightweight Infrastructure for Handling Multiple R Markdown Documents

Provides an infrastructure for handling multiple R Markdown reports, including automated curation and time-stamping of outputs, parameterisation and provision of helper functions to manage dependencies.

Last updated 2 years ago

infrastructureknitrrmarkdownrmarkdown-document

5.99 score 83 stars 47 scripts 315 downloads

trending - Model Temporal Trends

Provides a coherent interface to multiple modelling tools for fitting trends along with a standardised approach for generating confidence and prediction intervals.

Last updated 2 years ago

5.58 score 8 stars 1 packages 16 scripts 219 downloads

i2extras - Functions to Work with 'incidence2' Objects

Provides functions to work with 'incidence2' objects, including a simplified interface for trend fitting and peak estimation. This package is part of the RECON (<https://www.repidemicsconsortium.org/>) toolkit for outbreak analysis (<https://www.reconverse.org/).

Last updated 4 months ago

5.25 score 2 stars 22 scripts 377 downloads

trendeval - Evaluate Trending Models

Provides a coherent interface for evaluating models fit with the trending package. This package is part of the RECON (<https://www.repidemicsconsortium.org/>) toolkit for outbreak analysis.

Last updated 2 years ago

3.00 score 2 stars 7 scripts 157 downloads