Package: incidence2 2.6.1
Tim Taylor
incidence2: Compute, Handle and Plot Incidence of Dated Events
Provides functions and classes to compute, handle and visualise incidence from dated events for a defined time interval. Dates can be provided in various standard formats. The class 'incidence2' is used to store computed incidence and can be easily manipulated, subsetted, and plotted.
Authors:
incidence2_2.6.1.tar.gz
incidence2_2.6.1.zip(r-4.5)incidence2_2.6.1.zip(r-4.4)incidence2_2.6.1.zip(r-4.3)
incidence2_2.6.1.tgz(r-4.5-any)incidence2_2.6.1.tgz(r-4.4-any)incidence2_2.6.1.tgz(r-4.3-any)
incidence2_2.6.1.tar.gz(r-4.5-noble)incidence2_2.6.1.tar.gz(r-4.4-noble)
incidence2_2.6.1.tgz(r-4.4-emscripten)incidence2_2.6.1.tgz(r-4.3-emscripten)
incidence2.pdf |incidence2.html✨
incidence2/json (API)
NEWS
| # Install 'incidence2' in R: |
| install.packages('incidence2', repos = c('https://reconverse.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/reconverse/incidence2/issues
- covidregionaldataUK - Regional data for COVID-19 cases in the UK
Last updated 18 days agofrom:f1ff0b4420. Checks:9 OK. Indexed: yes.
| Target | Result | Latest binary |
|---|---|---|
| Doc / Vignettes | OK | Mar 12 2025 |
| R-4.5-win | OK | Mar 12 2025 |
| R-4.5-mac | OK | Mar 12 2025 |
| R-4.5-linux | OK | Mar 12 2025 |
| R-4.4-win | OK | Mar 12 2025 |
| R-4.4-mac | OK | Mar 12 2025 |
| R-4.4-linux | OK | Mar 12 2025 |
| R-4.3-win | OK | Mar 12 2025 |
| R-4.3-mac | OK | Mar 12 2025 |
Exports:as_incidenceas_tibbleas.data.tablebootstrap_incidencebuild_incidencecomplete_datescumulateestimate_peakfacet_plotfirst_peakget_count_valueget_count_value_nameget_count_variableget_count_variable_nameget_date_indexget_date_index_nameget_datesget_dates_nameget_group_namesget_groupsget_intervalget_timespanincidenceincidence_keep_firstkeep_lastkeep_peaksmutatemutednestnew_incidenceregroupregroup_selectsummariseunnestunpackvalidate_incidencevibrant
Dependencies:clicpp11data.tabledplyrfansigenericsgluegrateslifecyclemagrittrpillarpkgconfigpurrrR6rlangstringistringrtibbletidyrtidyselectutf8vctrswithrympes
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Access various elements of an incidence object | accessors get_count_value get_count_value.default get_count_value.incidence2 get_count_value_name get_count_value_name.default get_count_value_name.incidence2 get_count_variable get_count_variable.default get_count_variable.incidence2 get_count_variable_name get_count_variable_name.default get_count_variable_name.incidence2 get_dates get_dates_name get_date_index get_date_index.default get_date_index.incidence2 get_date_index_name get_date_index_name.default get_date_index_name.incidence2 get_groups get_groups.default get_groups.incidence2 get_group_names get_group_names.default get_group_names.incidence2 |
| Coerce to and from an incidence object | as as.data.frame.incidence2 as.data.table.incidence2 as_incidence as_incidence.default as_incidence.incidence2 as_tibble.incidence2 |
| Bootstrap incidence time series | bootstrap_incidence |
| Complete dates for all group combinations | complete_dates |
| Regional data for COVID-19 cases in the UK | covidregionaldataUK |
| Compute cumulative 'incidence' | cumulate |
| dplyr and tidyr verbs | dplyr-verbs mutate.incidence2 nest.incidence2 summarise.incidence2 |
| Estimate the peak date of an incidence curve | estimate_peak estimate_peaks |
| Compute the incidence of events | incidence incidence_ |
| Keep first, last and peak occurences | first_peak keep keep_first keep_last keep_peaks |
| Plot an incidence object | plot.incidence2 |
| Regroup 'incidence' objects | regroup regroup_ |
| Divide an incidence2 object in to it's implicit groupings | split.incidence2 |
| Summary of an incidence object | summary.incidence2 |
| Color palettes used in incidence | muted palettes vibrant |
